alakazam: Immunoglobulin Clonal Lineage and Diversity Analysis

Provides immunoglobulin (Ig) sequence lineage reconstruction, diversity profiling, and amino acid property analysis. Also provides core functionality for other tools in the Change-O suite.

Version: 0.2.5
Depends: R (≥ 3.1.2), ggplot2 (≥ 2.0.0)
Imports: data.table (≥ 1.9.4), dplyr, graphics, grid, igraph (≥ 1.0.0), lazyeval, methods, Rcpp (≥ 0.12.3), scales, seqinr, stats, stringi, utils
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, testthat
Published: 2016-08-06
Author: Jason Vander Heiden [aut, cre], Namita Gupta [aut], Susanna Marquez [ctb], Daniel Gadala-Maria [ctb], Roy Jiang [ctb], Steven Kleinstein [aut, cph]
Maintainer: Jason Vander Heiden <jason.vanderheiden at yale.edu>
BugReports: https://bitbucket.org/kleinstein/alakazam/issues
License: CC BY-NC-SA 4.0
URL: http://alakazam.readthedocs.org
NeedsCompilation: yes
SystemRequirements: C++11
Citation: alakazam citation info
Materials: README NEWS
CRAN checks: alakazam results

Downloads:

Reference manual: alakazam.pdf
Vignettes: Amino acid property analysis
Diversity analysis
Lineage reconstruction
Topology analysis
Package source: alakazam_0.2.5.tar.gz
Windows binaries: r-devel: alakazam_0.2.5.zip, r-release: alakazam_0.2.5.zip, r-oldrel: alakazam_0.2.5.zip
OS X Mavericks binaries: r-release: alakazam_0.2.5.tgz, r-oldrel: alakazam_0.2.5.tgz
Old sources: alakazam archive

Reverse dependencies:

Reverse imports: shazam, tigger

Linking:

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