admixturegraph: Admixture Graph Manipulation and Fitting

Implements tools for building and visualising admixture graphs and for extracting equations from them. These equations can be compared to f- statistics obtained from data to test the consistency of a graph against data – for example by comparing the sign of f_4-statistics with the signs predicted by the graph – and graph parameters (edge lengths and admixture proportions) can be fitted to observed statistics.

Version: 1.0.2
Depends: R (≥ 3.2.2)
Imports: doParallel, dplyr, foreach, ggplot2, graphics, MASS, methods, neldermead, parallel, pracma, stats, utils, grDevices
Suggests: knitr, rmarkdown, testthat
Published: 2016-12-13
Author: Thomas Mailund [cre, aut], Kalle Leppala [aut], Svend Nielsen [aut]
Maintainer: Thomas Mailund <mailund at birc.au.dk>
BugReports: https://github.com/mailund/admixture_graph/issues
License: GPL-2
URL: https://github.com/mailund/admixture_graph
NeedsCompilation: no
Materials: README
CRAN checks: admixturegraph results

Downloads:

Reference manual: admixturegraph.pdf
Vignettes: Constructing and fitting admixture graphs to D statistics
Package source: admixturegraph_1.0.2.tar.gz
Windows binaries: r-devel: admixturegraph_1.0.1.zip, r-release: admixturegraph_1.0.1.zip, r-oldrel: admixturegraph_1.0.1.zip
OS X Mavericks binaries: r-release: admixturegraph_1.0.1.tgz, r-oldrel: admixturegraph_1.0.1.tgz
Old sources: admixturegraph archive

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