KOGMWU: Functional Summary and Meta-Analysis of Gene Expression Data

Rank-based tests for enrichment of KOG (euKaryotic Orthologous Groups) classes with up- or down-regulated genes based on a continuous measure. The meta-analysis is based on correlation of KOG delta-ranks across datasets (delta-rank is the difference between mean rank of genes belonging to a KOG class and mean rank of all other genes). With binary measure (1 or 0 to indicate significant and non-significant genes), one-tailed Fisher's exact test for over-representation of each KOG class among significant genes will be performed.

Version: 1.1
Depends: R (≥ 2.10), pheatmap
Published: 2016-11-17
Author: Mikhail V. Matz
Maintainer: Mikhail V. Matz <matz at utexas.edu>
License: GPL-3
NeedsCompilation: no
CRAN checks: KOGMWU results

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Reference manual: KOGMWU.pdf
Package source: KOGMWU_1.1.tar.gz
Windows binaries: r-devel: KOGMWU_1.1.zip, r-release: KOGMWU_1.1.zip, r-oldrel: KOGMWU_1.1.zip
OS X Mavericks binaries: r-release: KOGMWU_1.1.tgz, r-oldrel: KOGMWU_1.1.tgz
Old sources: KOGMWU archive

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