INSPIRE: Inferring Shared Modules from Multiple Gene Expression Datasets with Partially Overlapping Gene Sets

A method to infer modules of co-expressed genes and the dependencies among the modules from multiple expression datasets that may contain different sets of genes. Please refer to: Extracting a low-dimensional description of multiple gene expression datasets reveals a potential driver for tumor-associated stroma in ovarian cancer, Safiye Celik, Benjamin A. Logsdon, Stephanie Battle, Charles W. Drescher, Mara Rendi, R. David Hawkins and Su-In Lee (2016) <doi:10.1186/s13073-016-0319-7>.

Version: 1.5
Imports: missMDA
Published: 2016-12-09
Author: Safiye Celik
Maintainer: Safiye Celik <safiye at cs.washington.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: inspire.cs.washington.edu
NeedsCompilation: yes
CRAN checks: INSPIRE results

Downloads:

Reference manual: INSPIRE.pdf
Package source: INSPIRE_1.5.tar.gz
Windows binaries: r-devel: INSPIRE_1.5.zip, r-release: INSPIRE_1.5.zip, r-oldrel: INSPIRE_1.5.zip
OS X Mavericks binaries: r-release: INSPIRE_1.5.tgz, r-oldrel: INSPIRE_1.5.tgz
Old sources: INSPIRE archive

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