CollapsABEL: Generalized CDH (GCDH) Analysis

Implements a generalized version of the CDH test (<doi:10.1371/journal.pone.0028145> and <doi:10.1186/s12859-016-1006-9>) for detecting compound heterozygosity on a genome-wide level, due to usage of generalized linear models it allows flexible analysis of binary and continuous traits with covariates.

Version: 0.10.11
Depends: R (≥ 3.1.0), rJava (≥ 0.9-6)
Imports: R.utils, RSQLite, biganalytics, bigmemory, collUtils, dplyr, ggplot2, methods, stringr, stats, haplo.stats
Suggests: testthat
Published: 2016-12-11
Author: Kaiyin Zhong, Fan Liu
Maintainer: Kaiyin Zhong <kindlychung at gmail.com>
BugReports: https://bitbucket.org/kindlychung/collapsabel2/issues
License: GPL-3
URL: https://bitbucket.org/kindlychung/collapsabel2/overview
NeedsCompilation: no
SystemRequirements: PLINK2, Java (>= 8.0), mysql
Materials: NEWS
CRAN checks: CollapsABEL results

Downloads:

Reference manual: CollapsABEL.pdf
Package source: CollapsABEL_0.10.11.tar.gz
Windows binaries: r-devel: CollapsABEL_0.10.11.zip, r-release: CollapsABEL_0.10.11.zip, r-oldrel: CollapsABEL_0.10.8.zip
OS X Mavericks binaries: r-release: CollapsABEL_0.10.11.tgz, r-oldrel: CollapsABEL_0.10.11.tgz
Old sources: CollapsABEL archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=CollapsABEL to link to this page.